{
  "_id": "6a1f2ea6b401979e73426b50",
  "Package": "AdverseEvents",
  "Title": "'shiny' Application for Adverse Event Analysis of 'OnCore' Data",
  "Version": "0.0.5",
  "Authors@R": "c(person(\"Z\", \"Thompson\", role = c(\"aut\", \"cre\"),\nemail = \"zachary.thompson@moffitt.org\"),\nperson(\"A\", \"Obermayer\", role = c(\"aut\"),\nemail = \"alyssa.obermayer@moffitt.org\"),\nperson(\"DT\", \"Chen\", role = c(\"aut\"),\nemail = \"dung-tsa.chen@moffitt.org\"))",
  "Author": "Z Thompson [aut, cre], A Obermayer [aut], DT Chen [aut]",
  "Maintainer": "Z Thompson <zachary.thompson@moffitt.org>",
  "Description": "An application for analysis of Adverse Events, as\ndescribed in Chen, et al., (2023)\n<doi:10.3390/cancers15092521>. The required data for the\napplication includes demographics, follow up, adverse event,\ndrug administration and optional tumor measurement data. The\napp can produce swimmers plots of adverse events, Kaplan-Meier\nplots and Cox Proportional Hazards model results for the\nassociation of adverse event biomarkers and overall survival\nand progression free survival. The adverse event biomarkers\ninclude occurrence of grade 3, low grade (1-2), and treatment\nrelated adverse events. Plots and tables of results are\ndownloadable.",
  "URL": "https://github.com/dungtsa/AdverseEvents",
  "License": "GPL-3",
  "Encoding": "UTF-8",
  "VignetteBuilder": "knitr",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.3.2",
  "Config/pak/sysreqs": "cmake libfontconfig1-dev libfreetype6-dev\nlibfribidi-dev make libharfbuzz-dev libicu-dev libjpeg-dev\nlibpng-dev libtiff-dev libuv1-dev libwebp-dev libxml2-dev\nlibssl-dev libx11-dev zlib1g-dev",
  "Repository": "https://dungtsa.r-universe.dev",
  "Date/Publication": "2025-08-18 16:01:28 UTC",
  "RemoteUrl": "https://github.com/dungtsa/adverseevents",
  "RemoteRef": "HEAD",
  "RemoteSha": "79e350e62174966bdd098d67c0432cc81b990f81",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-15 09:26:28 UTC",
    "User": "root"
  },
  "MD5sum": "c78e7269bfbce659ccf8831bbc7dd82a",
  "_user": "dungtsa",
  "_type": "src",
  "_file": "AdverseEvents_0.0.5.tar.gz",
  "_fileid": "5a13db545540af6c41a6018b1fbe3277a132896dc1e8313e9bce6509355735a5",
  "_filesize": 4279533,
  "_sha256": "5a13db545540af6c41a6018b1fbe3277a132896dc1e8313e9bce6509355735a5",
  "_created": "2026-05-15T09:26:28.000Z",
  "_published": "2026-06-02T19:27:34.120Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 79154238655,
      "time": 204,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7014083643"
    },
    {
      "job": 79154239012,
      "time": 195,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7014079421"
    },
    {
      "job": 79154239004,
      "time": 296,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7014081524"
    },
    {
      "job": 79154239200,
      "time": 197,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7014071924"
    },
    {
      "job": 79154238497,
      "time": 243,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7014021682"
    },
    {
      "job": 79154238335,
      "time": 164,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7367736622"
    },
    {
      "job": 79154238740,
      "time": 134,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7014061962"
    },
    {
      "job": 79154239214,
      "time": 128,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7014060509"
    },
    {
      "job": 79154239121,
      "time": 143,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7014064808"
    }
  ],
  "_buildurl": "https://github.com/r-universe/dungtsa/actions/runs/25910349759",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/dungtsa/adverseevents",
  "_commit": {
    "id": "79e350e62174966bdd098d67c0432cc81b990f81",
    "author": "Thompson, Zachary J <zachary.thompson@moffitt.org>",
    "committer": "Thompson, Zachary J <zachary.thompson@moffitt.org>",
    "message": "Added plot to duration summary tab\n",
    "time": 1755532888
  },
  "_maintainer": {
    "name": "Z Thompson",
    "email": "zachary.thompson@moffitt.org",
    "login": "zacharythompsonmoffitt",
    "uuid": 74988455
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "shiny",
      "role": "Imports"
    },
    {
      "package": "shinycssloaders",
      "role": "Imports"
    },
    {
      "package": "shinyjs",
      "role": "Imports"
    },
    {
      "package": "tidyverse",
      "role": "Imports"
    },
    {
      "package": "rio",
      "role": "Imports"
    },
    {
      "package": "janitor",
      "role": "Imports"
    },
    {
      "package": "DT",
      "role": "Imports"
    },
    {
      "package": "skimr",
      "role": "Imports"
    },
    {
      "package": "ggpubr",
      "role": "Imports"
    },
    {
      "package": "ggnewscale",
      "role": "Imports"
    },
    {
      "package": "survival",
      "role": "Imports"
    },
    {
      "package": "survminer",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "role": "Imports"
    },
    {
      "package": "shinythemes",
      "role": "Imports"
    },
    {
      "package": "ggrepel",
      "role": "Imports"
    },
    {
      "package": "lubridate",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    }
  ],
  "_owner": "dungtsa",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-30",
      "n": 1
    },
    {
      "week": "2025-31",
      "n": 1
    },
    {
      "week": "2025-33",
      "n": 4
    },
    {
      "week": "2025-34",
      "n": 1
    }
  ],
  "_tags": [],
  "_stars": 1,
  "_contributors": [
    {
      "user": "zacharythompsonmoffitt",
      "count": 12,
      "uuid": 74988455
    },
    {
      "user": "z2thet",
      "count": 6,
      "uuid": 39802460
    }
  ],
  "_userbio": {
    "uuid": 22158468,
    "type": "user",
    "name": "dungtsa"
  },
  "_downloads": {
    "count": 272,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/AdverseEvents"
  },
  "_devurl": "https://github.com/dungtsa/adverseevents",
  "_searchresults": 0,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/AdverseEvents.html",
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/dungtsa/adverseevents",
  "_realowner": "dungtsa",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.0.1",
      "date": "2024-10-11"
    },
    {
      "version": "0.0.2",
      "date": "2024-10-28"
    },
    {
      "version": "0.0.3",
      "date": "2024-11-04"
    },
    {
      "version": "0.0.4",
      "date": "2024-11-20"
    },
    {
      "version": "0.0.5",
      "date": "2026-02-03"
    }
  ],
  "_exports": [
    "resp_code_transform",
    "runAEapp"
  ],
  "_help": [
    {
      "page": "resp_code_transform",
      "title": "Convert RECIST response code",
      "topics": [
        "resp_code_transform"
      ]
    },
    {
      "page": "runAEapp",
      "title": "Run Adverse Events App",
      "topics": [
        "runAEapp"
      ]
    }
  ],
  "_readme": "https://github.com/dungtsa/adverseevents/raw/HEAD/README.md",
  "_rundeps": [
    "abind",
    "askpass",
    "backports",
    "base64enc",
    "bit",
    "bit64",
    "blob",
    "boot",
    "broom",
    "bslib",
    "cachem",
    "callr",
    "car",
    "carData",
    "cellranger",
    "cli",
    "clipr",
    "colorspace",
    "commonmark",
    "conflicted",
    "corrplot",
    "cowplot",
    "cpp11",
    "crayon",
    "crosstalk",
    "curl",
    "data.table",
    "DBI",
    "dbplyr",
    "Deriv",
    "digest",
    "doBy",
    "dplyr",
    "DT",
    "dtplyr",
    "evaluate",
    "exactRankTests",
    "farver",
    "fastmap",
    "fontawesome",
    "forcats",
    "forecast",
    "foreign",
    "Formula",
    "fracdiff",
    "fs",
    "gargle",
    "generics",
    "ggnewscale",
    "ggplot2",
    "ggpubr",
    "ggrepel",
    "ggsci",
    "ggsignif",
    "ggtext",
    "glue",
    "googledrive",
    "googlesheets4",
    "gridExtra",
    "gridtext",
    "gtable",
    "haven",
    "highr",
    "hms",
    "htmltools",
    "htmlwidgets",
    "httpuv",
    "httr",
    "ids",
    "isoband",
    "janitor",
    "jpeg",
    "jquerylib",
    "jsonlite",
    "knitr",
    "labeling",
    "later",
    "lattice",
    "lazyeval",
    "lifecycle",
    "litedown",
    "lme4",
    "lmtest",
    "lubridate",
    "magrittr",
    "markdown",
    "MASS",
    "Matrix",
    "MatrixModels",
    "maxstat",
    "memoise",
    "mgcv",
    "microbenchmark",
    "mime",
    "minqa",
    "modelr",
    "mvtnorm",
    "nlme",
    "nloptr",
    "nnet",
    "numDeriv",
    "openssl",
    "otel",
    "pbkrtest",
    "pillar",
    "pkgconfig",
    "png",
    "polynom",
    "prettyunits",
    "processx",
    "progress",
    "promises",
    "ps",
    "purrr",
    "quantreg",
    "R.methodsS3",
    "R.oo",
    "R.utils",
    "R6",
    "ragg",
    "rappdirs",
    "rbibutils",
    "RColorBrewer",
    "Rcpp",
    "RcppArmadillo",
    "RcppEigen",
    "Rdpack",
    "readr",
    "readxl",
    "reformulas",
    "rematch",
    "rematch2",
    "repr",
    "reprex",
    "rio",
    "rlang",
    "rmarkdown",
    "rstatix",
    "rstudioapi",
    "rvest",
    "S7",
    "sass",
    "scales",
    "selectr",
    "shiny",
    "shinycssloaders",
    "shinyjs",
    "shinythemes",
    "skimr",
    "snakecase",
    "sourcetools",
    "SparseM",
    "stringi",
    "stringr",
    "survival",
    "survminer",
    "sys",
    "systemfonts",
    "textshaping",
    "tibble",
    "tidyr",
    "tidyselect",
    "tidyverse",
    "timechange",
    "timeDate",
    "tinytex",
    "tzdb",
    "urca",
    "utf8",
    "uuid",
    "vctrs",
    "viridisLite",
    "vroom",
    "withr",
    "writexl",
    "xfun",
    "xml2",
    "xtable",
    "yaml",
    "zoo"
  ],
  "_vignettes": [
    {
      "source": "AdverseEvents.Rmd",
      "filename": "AdverseEvents.html",
      "title": "AdverseEvents",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "Running the app",
        "RECIST data",
        "Key Aspects of RECIST:",
        "Importance of RECIST:",
        "Data tab",
        "AE Plots and Measures",
        "AE measures",
        "Survival Analysis",
        "Response and Correlation tab",
        "Tables and reports"
      ],
      "created": "2024-11-05 21:17:01",
      "modified": "2024-11-05 21:17:01",
      "commits": 1
    }
  ],
  "_score": 4.301029995663981,
  "_indexed": true,
  "_nocasepkg": "adverseevents",
  "_universes": [
    "dungtsa",
    "zacharythompsonmoffitt"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.0.5",
      "date": "2026-05-15T09:29:31.000Z",
      "distro": "noble",
      "commit": "79e350e62174966bdd098d67c0432cc81b990f81",
      "fileid": "ebbc7c3058b9d41324049a0ee7018ad9e168c6e9f1cd76e7e8e85018da518413",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/dungtsa/actions/runs/25910349759"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.0.5",
      "date": "2026-05-15T09:29:19.000Z",
      "distro": "noble",
      "commit": "79e350e62174966bdd098d67c0432cc81b990f81",
      "fileid": "598f034e49a350187df283844aa0156cb7faa75c47c4cd8795715bff1940ee3a",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/dungtsa/actions/runs/25910349759"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.0.5",
      "date": "2026-05-15T09:29:16.000Z",
      "commit": "79e350e62174966bdd098d67c0432cc81b990f81",
      "fileid": "e60b199d1ff9b786c485c9a7d91f07a49021ff5facd68e7119195871cabc03ae",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/dungtsa/actions/runs/25910349759"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.0.5",
      "date": "2026-05-15T09:28:58.000Z",
      "commit": "79e350e62174966bdd098d67c0432cc81b990f81",
      "fileid": "bce7acd02169df37955afc599c71e0b760b07fa305b84cd792c02354fce47457",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/dungtsa/actions/runs/25910349759"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.0.5",
      "date": "2026-05-15T09:28:04.000Z",
      "commit": "79e350e62174966bdd098d67c0432cc81b990f81",
      "fileid": "7eb83ff2f25741ebe21a6e80f8ca44a64dfd5c26274947331926105bbdb7d049",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/dungtsa/actions/runs/25910349759"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.0.5",
      "date": "2026-05-15T09:28:03.000Z",
      "commit": "79e350e62174966bdd098d67c0432cc81b990f81",
      "fileid": "3e3392d10dc961389bcae36452f216bd59c22a10b6d985abe8dc920804a9d07d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/dungtsa/actions/runs/25910349759"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.0.5",
      "date": "2026-05-15T09:28:14.000Z",
      "commit": "79e350e62174966bdd098d67c0432cc81b990f81",
      "fileid": "6f8d917ccf830e1f4fde1e6bfb312c7d2951708d51befb252c1575b94a37518d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/dungtsa/actions/runs/25910349759"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.0.5",
      "date": "2026-06-02T19:27:16.000Z",
      "commit": "79e350e62174966bdd098d67c0432cc81b990f81",
      "fileid": "931f52a136e0e69d86d6a9fab8b94dab4633bdd546c24f2a3505580c6eac1ded",
      "status": "success",
      "buildurl": "https://github.com/r-universe/dungtsa/actions/runs/25910349759"
    }
  ]
}